Seminar Series

Feb. 17, 2017

A pilot study of ePHR implementation impact on physician workflow

The ePHR (electronic Personal Health Record) is a self-service technology (SST) used in health care, which can serve as an electronic information source for patients, physician and the government. Based on the literature review, we found that there are some concerns and barriers during the ePHR implement in industry perspectives, physicians’ perspective, patients’ perspectives and technology perspectives. In the pilot study of ePHR implementation impact on physician workflow, we conduct a qualitative analysis using structured physician interviews, and a quantitative analysis for physician workflow observations. We try to create recommendations for ePHR implementation for a variety…

Feb. 13, 2017

Decoding the auxin code: uncovering new players in the auxin pathway through WGCNA analysis

Auxins are a class of phytohormones in plants which have an active role in growth and development. The Auxin hormone control pathway in maize meristem is not well studied and has significant scope for in-depth exploration. Previous studies have not shown much novel information about how Auxin is regulated. Weighted Gene co-expression analysis takes results from differentially expressed genes and organizes them into clusters and modules showing possible interactions and co-regulation. These clusters usually highlight unique interactions which cannot be seen by most other methods. We present our ongoing work in building gene co-regulatory networks using certain gene knockouts in…

Feb. 6, 2017

RDF-Based Method to Uncover Implicit Health Communication Episodes from Unstructured Health Data

Health communication is the process that coordinates health services such as specimen transaction, oral interactions, medical records, and more. Healthcare workflows are based on communication established historically through the practice of healthcare or by the leadership in health institutions. However, during healthcare practices communication doesn’t flow according to plan; interpersonal miscommunication, technical glitches, information overload, etc. risk inefficient healthcare services. We hypothesize that health records contain information related to communication and we can retrieve it in order to address issues of communication. We present an informatics pipeline to retrieve health communication episodes from unstructured health data. The method uses Resource…

Jan. 30, 2017

Comparison of histone patterns in orthologus regions between mouse and human tissues

With the advent of next-generation sequencing technologies, a considerable effort has been put into sequencing the epigenome of different species. The efforts such as “Encode” and “Roadmap” epigenomics projects provide an opportunity to compare epigenomes across species (especially between human and mouse). This study is an effort to understand how different histone modifications vary/co-appear between orthologus regions of the two species. In this work, we have also used various measures of orthologus similarity between each pair of orthologus genes and explore how histone modifications are conserved with respect to changes in these similarity measures. These measures of similarity include “gene…

Jan. 23, 2017

Building an online quality improvement information exchange for home visiting programs in Missouri

Early childhood home visiting programs date back to the 1880s and deliver a vital public service of providing and connecting families with health, educational, and economic resources to support optimal development. Continuous quality improvement (CQI) consists of systematic and continuous actions that lead to measurable improvement in services for targeted groups. CQI initiatives (CQII) in home visiting programs have traditionally occurred within a local implementing agency (LIA), parent organization, or funding provision. LIA CQII are often lost to the benefit of external agencies facing similar challenges. We developed a web-based environment, the Gateway, to virtually connect and engage users within…

Dec. 5, 2016

Genetic variation, population structure, and genome assembly of the threatened Neosho madtom catfish

The Neosho madtom (Noturus placidus) is a small catfish, generally less than 3 inches in length, unique to the Neosho-Spring River system within the Arkansas River Basin. It was federally listed as threatened in 1990, largely due to habitat loss. As part of conservation efforts, we generated whole genome Illumina paired-end sequence data from ten Neosho madtom (average 39X coverage) originating from three geographically separated subpopulations to evaluate genetic diversity and population structure. One slender madtom (Noturus exilis) was also sequenced as an outgroup. Although over 1 million variants were found between Neosho and slender madtom, only 86,155 SNPs were…

Nov. 14, 2016

Quantification of selective constraint in the polyploid genomes of Arabidopsis thaliana and Brassica rapa

Polyploidy is an important mechanism in plant evolution. We are interested in studying how selective pressures change after a lineage experiences whole genome duplication (WGD) or triplication (WGT). Alpha duplication is the most recent WGD event in Arabidopsis. Then a WGT event occurred in genus Brassica when they diverged from Arabidopsis thaliana. We examined selection at both the population and the species level, by calculating the ratio of non-synonymous to synonymous polymorphisms (pN/pS) and computing Ka/Ks between species. In both lineages of Arabidopsis and Brassica, pN/pS values are larger than Ka/Ks, in accord with the expectation that most populations include…

Nov. 7, 2016

Identifying Patients at Risk of High Healthcare Utilization

Objective: To develop a systematic and reproducible way to identify patients at increased risk for higher healthcare costs. Methods: Medical records were analyzed for 9,581 adults who were primary care patients in the University of Missouri Health System and who were enrolled in Medicare or Medicaid. Patients were categorized into one of four risk tiers as of October 1, 2013, and the four tiers were compared on demographic characteristics, number of healthcare episodes, and healthcare charges in the year before and the year after cohort formation. Results: The mean number of healthcare episodes and the sum of healthcare charges in…

Oct. 11, 2016

A Metagenomic Analysis of the Effect of Residual Feed Intake on Rumen Metabolism

Ruminant animals have a symbiotic relationship with gastrointestinal microorganisms in the rumen where microbes degrade compounds that can be used in the host animal’s metabolism. Currently, changes in the diet or feed efficiency of the sheep results in differences to the rumen’s microbiota population. By using a metabolic approach, the effects of differing residual feed intake (RFI) on the rumen’s microbiome are analyzed to determine the network interface between the host’s metabolism and rumen microbiome. These findings demonstrate important network structure differences between low and high RFI animals providing a greater understanding of the complexities in the rumen ecosystem.